* If multiple RAID arrays are formed by the same controller and one fails, the identifiers provided by the arrays exposed to the OS might become inconsistent. Giving the drives directly to the OS allows this to be avoided via naming that maps to a unique port or unique drive identifier.
** e.g. If you have arrays A, B, C and D; array B dies, the interaction between the hardware RAID controller and the OS might rename arrays C and D to look like arrays B and C respectively. This can fault pools.
* Controller failures can require that the controller be replaced with the same model, or in less extreme cases, a model from the same manufacturer. Using ZFS by itself allows any controller to be used.